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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001105543.2 → NP_001099013.1 plexin-A4 isoform 3 precursor
See identical proteins and their annotated locations for NP_001099013.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has a different 3' terminal exon, and is missing many coding exons found in variant 1. It thus encodes a shorter isoform (3) with the same N-terminus, but a different C-terminus compared to isoform 1.
- Source sequence(s)
-
AC011625, AK123428, DR003088
- Consensus CDS
-
CCDS43647.1
- UniProtKB/TrEMBL
-
A0A384NYW6
- Related
- ENSP00000392772.2, ENST00000423507.6
- Conserved Domains (1) summary
-
- cl15693
Location:39 → 458
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
-
NM_001393897.1 → NP_001380826.1 plexin-A4 isoform 1 precursor
Status: VALIDATED
- Source sequence(s)
-
AC009364, AC009785, AC018643
- Consensus CDS
-
CCDS43646.1
- UniProtKB/Swiss-Prot
- A4D1N6, E9PAM2, Q6UWC6, Q6ZW89, Q8N969, Q8ND00, Q8NEN3, Q9HCM2, Q9NTD4
- Related
- ENSP00000352882.3, ENST00000359827.7
- Conserved Domains (10) summary
-
- cd11274
Location:39 → 511
- Sema_plexin_A4; The Sema domain, a protein interacting module, of Plexin A4
- smart00423
Location:510 → 548
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00603
Location:1142 → 1222
- IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
- cd01179
Location:955 → 1038
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:858 → 953
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1040 → 1140
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:804 → 856
- PSI; Plexin repeat
- pfam08337
Location:1311 → 1864
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- pfam17960
Location:564 → 654
- TIG_plexin; TIG domain
- pfam18020
Location:708 → 802
- TIG_2; TIG domain found in plexin
-
NM_020911.2 → NP_065962.1 plexin-A4 isoform 1 precursor
See identical proteins and their annotated locations for NP_065962.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AA253415, AB046770, AC018643, AK123428, CD243425, DR003088
- Consensus CDS
-
CCDS43646.1
- UniProtKB/Swiss-Prot
- A4D1N6, E9PAM2, Q6UWC6, Q6ZW89, Q8N969, Q8ND00, Q8NEN3, Q9HCM2, Q9NTD4
- Related
- ENSP00000323194.4, ENST00000321063.9
- Conserved Domains (10) summary
-
- cd11274
Location:39 → 511
- Sema_plexin_A4; The Sema domain, a protein interacting module, of Plexin A4
- smart00423
Location:510 → 548
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00603
Location:1142 → 1222
- IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
- cd01179
Location:955 → 1038
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:858 → 953
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1040 → 1140
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:804 → 856
- PSI; Plexin repeat
- pfam08337
Location:1311 → 1864
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- pfam17960
Location:564 → 654
- TIG_plexin; TIG domain
- pfam18020
Location:708 → 802
- TIG_2; TIG domain found in plexin
-
NM_181775.4 → NP_861440.2 plexin-A4 isoform 2 precursor
See identical proteins and their annotated locations for NP_861440.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has different 5' and 3' terminal exons, and is missing many coding exons found in variant 1. It thus encodes a shorter isoform (2) with the same N-terminus, but a different C-terminus compared to isoform 1.
- Source sequence(s)
-
AL137352, BC028744
- Consensus CDS
-
CCDS5826.1
- UniProtKB/TrEMBL
-
A0A384NYW6
- Related
- ENSP00000367800.5, ENST00000378539.5
- Conserved Domains (1) summary
-
- cl15693
Location:39 → 469
- Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
132123340..132648688 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017012779.1 → XP_016868268.1 plexin-A4 isoform X2
-
XM_006716171.5 → XP_006716234.1 plexin-A4 isoform X1
See identical proteins and their annotated locations for XP_006716234.1
- UniProtKB/Swiss-Prot
- A4D1N6, E9PAM2, Q6UWC6, Q6ZW89, Q8N969, Q8ND00, Q8NEN3, Q9HCM2, Q9NTD4
- Conserved Domains (10) summary
-
- cd11274
Location:39 → 511
- Sema_plexin_A4; The Sema domain, a protein interacting module, of Plexin A4
- smart00423
Location:510 → 548
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd00603
Location:1142 → 1222
- IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
- cd01179
Location:955 → 1038
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:858 → 953
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1040 → 1140
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:804 → 856
- PSI; Plexin repeat
- pfam08337
Location:1311 → 1864
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- pfam17960
Location:564 → 654
- TIG_plexin; TIG domain
- pfam18020
Location:708 → 802
- TIG_2; TIG domain found in plexin
-
XM_047421017.1 → XP_047276973.1 plexin-A4 isoform X1
- UniProtKB/Swiss-Prot
- A4D1N6, E9PAM2, Q6UWC6, Q6ZW89, Q8N969, Q8ND00, Q8NEN3, Q9HCM2, Q9NTD4
-
XM_011516676.3 → XP_011514978.1 plexin-A4 isoform X3
- Conserved Domains (7) summary
-
- cd11274
Location:39 → 511
- Sema_plexin_A4; The Sema domain, a protein interacting module, of Plexin A4
- cd00603
Location:1142 → 1222
- IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
- cd01179
Location:955 → 1038
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:858 → 953
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1040 → 1140
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:509 → 555
- PSI; Plexin repeat
- cl02569
Location:1311 → 1339
- RasGAP; Ras GTPase Activating Domain
-
XM_047421018.1 → XP_047276974.1 plexin-A4 isoform X5
-
XM_047421019.1 → XP_047276975.1 plexin-A4 isoform X4
- UniProtKB/TrEMBL
-
A0A384NYW6
RNA
-
XR_927546.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
133444537..133970190 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054359310.1 → XP_054215285.1 plexin-A4 isoform X2
-
XM_054359308.1 → XP_054215283.1 plexin-A4 isoform X1
- UniProtKB/Swiss-Prot
- A4D1N6, E9PAM2, Q6UWC6, Q6ZW89, Q8N969, Q8ND00, Q8NEN3, Q9HCM2, Q9NTD4
-
XM_054359309.1 → XP_054215284.1 plexin-A4 isoform X1
- UniProtKB/Swiss-Prot
- A4D1N6, E9PAM2, Q6UWC6, Q6ZW89, Q8N969, Q8ND00, Q8NEN3, Q9HCM2, Q9NTD4
-
XM_054359311.1 → XP_054215286.1 plexin-A4 isoform X3
-
XM_054359312.1 → XP_054215287.1 plexin-A4 isoform X4
- UniProtKB/TrEMBL
-
A0A384NYW6
RNA
-
XR_008487773.1 RNA Sequence