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    LOC105375075 uncharacterized LOC105375075 [ Homo sapiens (human) ]

    Gene ID: 105375075, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105375075
    Gene description
    uncharacterized LOC105375075
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105375075 in Genome Data Viewer
    Location:
    6p21.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (44546161..44551881, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (44380783..44386504, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (44513898..44519618, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17264 Neighboring gene CRISPRi-validated cis-regulatory element chr6.3216 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44443176-44443706 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:44447928-44448147 Neighboring gene cell division cycle 5 like Neighboring gene microRNA 4642 Neighboring gene uncharacterized LOC105375074 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44510389-44511019 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:44588544-44589128 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44592119-44592626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44592627-44593135 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44594661-44595168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44595169-44595676 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44597530-44598150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:44598773-44599392 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:44610400-44611599 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:44619143-44619644 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:44619645-44620144 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44634844-44635352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44636371-44636878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24641 Neighboring gene uncharacterized LOC124901325 Neighboring gene uncharacterized LOC101929770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24643 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44727363-44727954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:44739389-44740008 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44838634-44839257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:44846566-44847066 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91988 Neighboring gene SPT3 homolog, SAGA and STAGA complex component Neighboring gene NUDT19 pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134609.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI005088, BX089045

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      44546161..44551881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      44380783..44386504 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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