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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008337.2 RefSeqGene
- Range
-
5037..73222
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001365276.2 → NP_001352205.1 tenascin-X isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3). It should be noted that the exon combination of this variant lacks full-length transcript support in human; it is predicted based on a combination of partial human and homologous transcript alignments.
- Source sequence(s)
-
AL645922, AL662884, AL772248
- Consensus CDS
-
CCDS93886.1
- UniProtKB/Swiss-Prot
- P22105, P78530, P78531, Q08424, Q08AM0, Q08AM1, Q59GU7, Q5SQD3, Q5ST74, Q7L8Q4, Q8N4R1, Q9NPK9, Q9UC10, Q9UC11, Q9UC12, Q9UC13, Q9UMG7
- UniProtKB/TrEMBL
-
A0A140TA52
- Related
- ENSP00000496448.1, ENST00000644971.2
- Conserved Domains (5) summary
-
- cd00063
Location:1156 → 1238
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00147
Location:4026 → 4235
- Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
- pfam07974
Location:621 → 647
- EGF_2; EGF-like domain
- pfam00041
Location:3758 → 3836
- fn3; Fibronectin type III domain
- cl28643
Location:254 → 669
- VSP; Giardia variant-specific surface protein
-
NM_001428335.1 → NP_001415264.1 tenascin-X isoform 4 precursor
Status: REVIEWED
- Source sequence(s)
-
AL645922, AL662884, AL772248
- UniProtKB/TrEMBL
- A0A140TA52, A0A3B3ISX9
- Related
- ENSP00000497649.1, ENST00000647633.1
-
NM_019105.8 → NP_061978.6 tenascin-X isoform 1 precursor
See identical proteins and their annotated locations for NP_061978.6
Status: REVIEWED
- Description
- Transcript Variant: This variant (XB) uses an alternate in-frame splice junction compared to variant 3. The resulting isoform (1) has the same N- and C-termini but is shorter compared to isoform 3. It should be noted that the exon combination of this variant lacks full-length transcript support in human; it is predicted based on a combination of partial human and homologous transcript alignments.
- Source sequence(s)
-
AL645922, AL662884, AL772248
- UniProtKB/TrEMBL
-
A0A140TA52
- Conserved Domains (4) summary
-
- cd00063
Location:1156 → 1238
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:3757 → 3834
- fn3; Fibronectin type III domain
- pfam00147
Location:4024 → 4233
- Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
- pfam07974
Location:621 → 647
- EGF_2; EGF-like domain
-
NM_032470.4 → NP_115859.2 tenascin-X isoform 2
See identical proteins and their annotated locations for NP_115859.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (XB-S) is transcribed from a cryptic internal promoter sequence and is substantially shorter than variant 3 at the 5' end. It encodes isoform 2, which is identical to the C-terminus of the full-length protein, isoform 3.
- Source sequence(s)
-
AL645922, BC071883, BC130037, BQ446909, U24488
- Consensus CDS
-
CCDS4736.1
- UniProtKB/Swiss-Prot
-
P22105
- UniProtKB/TrEMBL
-
Q6IPK3
- Related
- ENSP00000407685.1, ENST00000451343.4
- Conserved Domains (3) summary
-
- cd00063
Location:274 → 360
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:188 → 265
- fn3; Fibronectin type III domain
- pfam00147
Location:455 → 664
- Fibrinogen_C; Fibrinogen beta and gamma chains, C-terminal globular domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
32041153..32109338 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NT_167244.2 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
3406268..3420263 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
3479475..3547671 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_3
Genomic
-
NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3
- Range
-
3282561..3350704 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_4
Genomic
-
NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4
- Range
-
3369799..3403209 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_5
Genomic
-
NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5
- Range
-
3383186..3451358 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_6
Genomic
-
NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6
- Range
-
3264388..3310650 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_7
Genomic
-
NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7
- Range
-
3342340..3369633 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
31894357..31962530 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)