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    RNVU1-15 RNA, variant U1 small nuclear 15 [ Homo sapiens (human) ]

    Gene ID: 101954267, updated on 17-Jun-2024

    Summary

    Official Symbol
    RNVU1-15provided by HGNC
    Official Full Name
    RNA, variant U1 small nuclear 15provided by HGNC
    Primary source
    HGNC:HGNC:48320
    See related
    Ensembl:ENSG00000207205 AllianceGenome:HGNC:48320
    Gene type
    snRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    vU1.15; vU1.16; RNU1-66; RNU1-121; RNVU1-16
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    Genomic context

    See RNVU1-15 in Genome Data Viewer
    Location:
    1q21.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (144412576..144412740)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (143653861..143654025, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (148604908..148605072, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene extensin Neighboring gene Sharpr-MPRA regulatory region 1883 duplicate 2 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:148645625-148646126 Neighboring gene peptidylprolyl isomerase A like 4E Neighboring gene hESC enhancers GRCh37_chr1:148603911-148604598 and GRCh37_chr1:148766495-148767201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:148603221-148603910 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:148760689-148761190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1257 Neighboring gene tRNA-Asn (anticodon GTT) 3-1 Neighboring gene NBPF member 15 Neighboring gene profilin 1 pseudogene 6

    Genomic regions, transcripts, and products

    General gene information

    Other Names

    • RNA, variant U1 small nuclear 16

    Clone Names

    • FLJ39739

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104076.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC246785
      Related
      ENST00000384476.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      144412576..144412740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      143653861..143654025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)