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    SLC30A4-AS1 SLC30A4 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105376714, updated on 28-Oct-2024

    Summary

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    Official Symbol
    SLC30A4-AS1provided by HGNC
    Official Full Name
    SLC30A4 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56661
    See related
    AllianceGenome:HGNC:56661
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    hLinfRNA4
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See SLC30A4-AS1 in Genome Data Viewer
    Location:
    15q21.1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (45448354..45500048)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (43256515..43308814)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45741730-45742660 Neighboring gene uncharacterized LOC124903483 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45746566-45747066 Neighboring gene RNA, U7 small nuclear 5 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9361 Neighboring gene NANOG hESC enhancer GRCh37_chr15:45751227-45751805 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:45764241-45764930 Neighboring gene solute carrier family 30 member 4 Neighboring gene small nucleolar RNA U13 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 46 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6410 Neighboring gene small nucleolar RNA, H/ACA box 41B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45839047-45839548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:45839549-45840048 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:45840653-45841852 Neighboring gene developmental pluripotency associated 5 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Integrated Analysis of Long Non-Coding RNA and mRNA Expression Profile in Pancreatic Cancer Derived Exosomes Treated Dendritic Cells by Microarray Analysis. Chen J, et al. J Cancer, 2018. PMID 29290766, Free PMC Article
    2. Novel long non-coding RNAs associated with inflammation and macrophage activation in human. Chini A, et al. Sci Rep, 2023 Mar 10. PMID 36899011, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein SLC30A4-AS1
    Names
    RP11-519G16.3
    human Long-noncoding inflammation associated RNA 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      45448354..45500048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047433408.1 → XP_047289364.1  uncharacterized protein SLC30A4-AS1 isoform X1

    2. XM_047433407.1 → XP_047289363.1  uncharacterized protein SLC30A4-AS1 isoform X1

    3. XM_047433410.1 → XP_047289366.1  uncharacterized protein SLC30A4-AS1 isoform X3

    4. XM_047433409.1 → XP_047289365.1  uncharacterized protein SLC30A4-AS1 isoform X2

    RNA

    1. XR_007064614.1 RNA Sequence

    2. XR_007064615.1 RNA Sequence

    3. XR_007064611.1 RNA Sequence

    4. XR_007064610.1 RNA Sequence

    5. XR_007064613.1 RNA Sequence

    6. XR_007064612.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      43256515..43308814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047446551.1 → XP_047302507.1  uncharacterized protein SLC30A4-AS1 isoform X1

    2. XM_047446550.1 → XP_047302506.1  uncharacterized protein SLC30A4-AS1 isoform X1

    3. XM_047446553.1 → XP_047302509.1  uncharacterized protein SLC30A4-AS1 isoform X3

    4. XM_047446552.1 → XP_047302508.1  uncharacterized protein SLC30A4-AS1 isoform X2

    RNA

    1. XR_007085934.1 RNA Sequence

    2. XR_007085936.1 RNA Sequence

    3. XR_007085931.1 RNA Sequence

    4. XR_007085933.1 RNA Sequence

    5. XR_007085935.1 RNA Sequence

    6. XR_007085932.1 RNA Sequence

    7. XR_007085928.1 RNA Sequence

    8. XR_007085927.1 RNA Sequence

    9. XR_007085930.1 RNA Sequence

    10. XR_007085929.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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