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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009809.2 RefSeqGene
- Range
-
5047..428406
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001005609.2 → NP_001005609.1 ectodysplasin-A isoform 2
See identical proteins and their annotated locations for NP_001005609.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site compared to variant 1. The resulting isoform (2, also known as EDA-A2) has the same N- and C-termini but is shorter than isoform 1.
- Source sequence(s)
-
AF040628, AL158141, BC144051, BQ008767
- Consensus CDS
-
CCDS43966.1
- UniProtKB/TrEMBL
- A0A0K0KSD3, A0A0U5J797
- Related
- ENSP00000363681.2, ENST00000374553.6
- Conserved Domains (1) summary
-
- cd00184
Location:249 → 381
- TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
-
NM_001005610.4 → NP_001005610.2 ectodysplasin-A isoform 3
See identical proteins and their annotated locations for NP_001005610.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR and coding region compared to variant 1. The resulting isoform (3, also known as EDA-O) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
BC144049, CA433299, FO393403, U59228
- Consensus CDS
-
CCDS35318.2
- UniProtKB/Swiss-Prot
-
Q92838
- Related
- ENSP00000434195.1, ENST00000525810.5
-
NM_001005612.3 → NP_001005612.2 ectodysplasin-A isoform 5
See identical proteins and their annotated locations for NP_001005612.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses two alternate in-frame splice sites compared to variant 1. The resulting isoform (5) has the same N- and C-termini but is shorter than isoform 1.
- Source sequence(s)
-
AF061189, AL158141, BC144049, BU608133
- Consensus CDS
-
CCDS35319.2
- UniProtKB/TrEMBL
-
A0A0K0KSD3
- Related
- ENSP00000432585.1, ENST00000524573.5
- Conserved Domains (1) summary
-
- cd00184
Location:249 → 378
- TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
-
NM_001005613.4 → NP_001005613.1 ectodysplasin-A isoform 6
See identical proteins and their annotated locations for NP_001005613.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 3' UTR and coding region compared to variant 1. The resulting isoform (6, also known as EDA-E) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AF061193, BC144049, CA433299, FO393403
- Consensus CDS
-
CCDS55436.1
- UniProtKB/Swiss-Prot
-
Q92838
- Related
- ENSP00000434861.1, ENST00000527388.5
-
NM_001399.5 → NP_001390.1 ectodysplasin-A isoform 1
See identical proteins and their annotated locations for NP_001390.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1, also known as EDA-A1).
- Source sequence(s)
-
AF040628, AL158141, BC126143, BQ008767
- Consensus CDS
-
CCDS14394.1
- UniProtKB/Swiss-Prot
- A0AUZ2, A2A337, B7ZLU2, B7ZLU4, O75910, Q5JS00, Q5JUM7, Q92838, Q9UP77, Q9Y6L0, Q9Y6L1, Q9Y6L2, Q9Y6L3, Q9Y6L4
- UniProtKB/TrEMBL
-
A0A0K0KSD3
- Related
- ENSP00000363680.4, ENST00000374552.9
- Conserved Domains (1) summary
-
- cl00147
Location:249 → 383
- TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
69616113..70039472
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017029336.2 → XP_016884825.1 ectodysplasin-A isoform X2
- UniProtKB/TrEMBL
-
A0A0K0KSD3
- Conserved Domains (1) summary
-
- cl00147
Location:249 → 369
- TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
-
XM_006724630.3 → XP_006724693.1 ectodysplasin-A isoform X1
See identical proteins and their annotated locations for XP_006724693.1
- UniProtKB/TrEMBL
-
A0A0K0KSD3
- Conserved Domains (1) summary
-
- cd00184
Location:249 → 380
- TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
-
XM_011530885.3 → XP_011529187.1 ectodysplasin-A isoform X3
- Conserved Domains (1) summary
-
- cl00147
Location:249 → 325
- TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
-
XM_017029337.2 → XP_016884826.1 ectodysplasin-A isoform X4
RNA
-
XR_001755660.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
68049526..68472825
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326644.1 → XP_054182619.1 ectodysplasin-A isoform X2
- UniProtKB/TrEMBL
-
A0A0K0KSD3
-
XM_054326643.1 → XP_054182618.1 ectodysplasin-A isoform X1
- UniProtKB/TrEMBL
-
A0A0K0KSD3
-
XM_054326645.1 → XP_054182620.1 ectodysplasin-A isoform X3
-
XM_054326646.1 → XP_054182621.1 ectodysplasin-A isoform X4
RNA
-
XR_008485459.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001005611.1: Suppressed sequence
- Description
- NM_001005611.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
-
NM_001005614.1: Suppressed sequence
- Description
- NM_001005614.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.