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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030367.2 RefSeqGene
- Range
-
11465..44994
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001134851.4 → NP_001128323.2 transcription factor 7 isoform 3
See identical proteins and their annotated locations for NP_001128323.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3, also known as A), differs in the 5' UTR, has multiple coding region differences, uses a downstream start codon, and differs in the 3' UTR, compared to variant 1. The resulting isoform (3) is shorter at the N-terminus and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC011336, HY048657, X59869, X59871
- Consensus CDS
-
CCDS47263.2
- UniProtKB/TrEMBL
-
E5RG34
- Related
- ENSP00000430179.1, ENST00000518915.5
- Conserved Domains (2) summary
-
- cd01388
Location:154 → 224
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:1 → 97
- CTNNB1_binding; N-terminal CTNNB1 binding
-
NM_001346425.2 → NP_001333354.1 transcription factor 7 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) contains an alternate exon in the coding region, compared to variant 1. The resulting isoform (5) is longer, compared to isoform 1.
- Source sequence(s)
-
AC008608, AC011336, AK057580, AL832816, BC048769, CR976030, X59870
- UniProtKB/Swiss-Prot
-
P36402
- UniProtKB/TrEMBL
-
B3KQ75
-
NM_001346450.2 → NP_001333379.1 transcription factor 7 isoform 7
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) differs in the 5' UTR, has multiple coding region differences, and uses a downstream start codon, compared to variant 1. The resulting isoform (7) is shorter at the N-terminus and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC011336, CN274309, DB128524, X59871
- UniProtKB/TrEMBL
-
E5RG34
- Related
- ENSP00000427870.2, ENST00000522375.6
-
NM_001366502.2 → NP_001353431.1 transcription factor 7 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC011336, AK310591, DB137814
- Conserved Domains (2) summary
-
- cd01388
Location:129 → 199
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:12 → 72
- CTNNB1_binding; N-terminal CTNNB1 binding
-
NM_003202.5 → NP_003193.2 transcription factor 7 isoform 1
See identical proteins and their annotated locations for NP_003193.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform (1).
- Source sequence(s)
-
AC008608, AC011336, AK057580, AL832816, BC048769, X59870
- Consensus CDS
-
CCDS4169.1
- UniProtKB/Swiss-Prot
-
P36402
- UniProtKB/TrEMBL
-
B3KQ75
- Related
- ENSP00000340347.5, ENST00000342854.10
- Conserved Domains (2) summary
-
- cd01388
Location:269 → 339
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
NM_201632.5 → NP_963963.1 transcription factor 7 isoform 2
See identical proteins and their annotated locations for NP_963963.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as B), differs in the 5' UTR, has multiple coding region differences, and uses a downstream start codon, compared to variant 1. The resulting isoform (2) is shorter at the N-terminus, compared to isoform 1. Both variants 2 and 5 encode the same isoform.
- Source sequence(s)
-
AC011336, AK057580, BC048769, DB106996, X59870
- Consensus CDS
-
CCDS4170.1
- UniProtKB/TrEMBL
-
E5RG34
- Related
- ENSP00000378469.1, ENST00000395023.5
- Conserved Domains (2) summary
-
- cd01388
Location:154 → 224
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:1 → 97
- CTNNB1_binding; N-terminal CTNNB1 binding
-
NM_201634.5 → NP_963965.1 transcription factor 7 isoform 4
See identical proteins and their annotated locations for NP_963965.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4, also known as C), differs in the 5' UTR, has multiple coding region differences, uses a downstream start codon, and differs in the 3' UTR, compared to variant 1. The resulting isoform (4) is shorter at the N-terminus and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC011336, CN274309, HY048657, X59871
- Consensus CDS
-
CCDS43362.1
- UniProtKB/TrEMBL
-
E5RG34
- Related
- ENSP00000367822.4, ENST00000378560.8
- Conserved Domains (2) summary
-
- cd01388
Location:154 → 224
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:1 → 97
- CTNNB1_binding; N-terminal CTNNB1 binding
-
NM_213648.5 → NP_998813.1 transcription factor 7 isoform 2
See identical proteins and their annotated locations for NP_998813.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, has multiple coding region differences, and uses a downstream start codon, compared to variant 1. The resulting isoform (2) is shorter at the N-terminus, compared to isoform 1. Both variants 2 and 5 encode the same isoform.
- Source sequence(s)
-
AC011336, AK057580, AL832816, BC048769, DB137814, DB161143, X59870
- Consensus CDS
-
CCDS4170.1
- UniProtKB/TrEMBL
-
E5RG34
- Related
- ENSP00000429547.1, ENST00000520958.5
- Conserved Domains (2) summary
-
- cd01388
Location:154 → 224
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:1 → 97
- CTNNB1_binding; N-terminal CTNNB1 binding
RNA
-
NR_033449.3 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) uses an alternate 5' exon structure and lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC008608, AC011336, AK057580
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
134108218..134148210
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047417636.1 → XP_047273592.1 transcription factor 7 isoform X9
-
XM_047417640.1 → XP_047273596.1 transcription factor 7 isoform X13
-
XM_047417634.1 → XP_047273590.1 transcription factor 7 isoform X5
-
XM_047417635.1 → XP_047273591.1 transcription factor 7 isoform X6
-
XM_047417641.1 → XP_047273597.1 transcription factor 7 isoform X15
-
XM_047417638.1 → XP_047273594.1 transcription factor 7 isoform X11
-
XM_006714678.4 → XP_006714741.1 transcription factor 7 isoform X1
- Conserved Domains (2) summary
-
- cd01388
Location:300 → 370
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_047417633.1 → XP_047273589.1 transcription factor 7 isoform X4
-
XM_011543606.2 → XP_011541908.1 transcription factor 7 isoform X7
- Conserved Domains (2) summary
-
- cd01388
Location:300 → 370
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_006714682.3 → XP_006714745.1 transcription factor 7 isoform X8
- Conserved Domains (2) summary
-
- cd01388
Location:300 → 370
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_006714679.4 → XP_006714742.1 transcription factor 7 isoform X2
- Conserved Domains (2) summary
-
- cd01388
Location:269 → 339
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_047417637.1 → XP_047273593.1 transcription factor 7 isoform X10
-
XM_047417639.1 → XP_047273595.1 transcription factor 7 isoform X12
-
XM_006714684.3 → XP_006714747.1 transcription factor 7 isoform X14
- UniProtKB/Swiss-Prot
-
P36402
- Conserved Domains (2) summary
-
- cd01388
Location:269 → 339
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_011543604.3 → XP_011541906.1 transcription factor 7 isoform X3
- Conserved Domains (2) summary
-
- cd01388
Location:300 → 370
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:20 → 212
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_047417643.1 → XP_047273599.1 transcription factor 7 isoform X18
-
XM_047417642.1 → XP_047273598.1 transcription factor 7 isoform X18
-
XM_006714685.5 → XP_006714748.1 transcription factor 7 isoform X16
- Conserved Domains (2) summary
-
- cd01388
Location:185 → 255
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:1 → 97
- CTNNB1_binding; N-terminal CTNNB1 binding
-
XM_006714686.5 → XP_006714749.1 transcription factor 7 isoform X17
- Conserved Domains (2) summary
-
- cd01388
Location:154 → 224
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam08347
Location:1 → 97
- CTNNB1_binding; N-terminal CTNNB1 binding
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
134630059..134671840
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054353323.1 → XP_054209298.1 transcription factor 7 isoform X9
-
XM_054353327.1 → XP_054209302.1 transcription factor 7 isoform X13
-
XM_054353319.1 → XP_054209294.1 transcription factor 7 isoform X5
-
XM_054353320.1 → XP_054209295.1 transcription factor 7 isoform X6
-
XM_054353329.1 → XP_054209304.1 transcription factor 7 isoform X15
-
XM_054353325.1 → XP_054209300.1 transcription factor 7 isoform X11
-
XM_054353315.1 → XP_054209290.1 transcription factor 7 isoform X1
-
XM_054353318.1 → XP_054209293.1 transcription factor 7 isoform X4
-
XM_054353321.1 → XP_054209296.1 transcription factor 7 isoform X7
-
XM_054353322.1 → XP_054209297.1 transcription factor 7 isoform X8
-
XM_054353316.1 → XP_054209291.1 transcription factor 7 isoform X2
-
XM_054353324.1 → XP_054209299.1 transcription factor 7 isoform X10
-
XM_054353326.1 → XP_054209301.1 transcription factor 7 isoform X12
-
XM_054353328.1 → XP_054209303.1 transcription factor 7 isoform X14
-
XM_054353317.1 → XP_054209292.1 transcription factor 7 isoform X3
-
XM_054353335.1 → XP_054209310.1 transcription factor 7 isoform X18
-
XM_054353334.1 → XP_054209309.1 transcription factor 7 isoform X18
-
XM_054353336.1 → XP_054209311.1 transcription factor 7 isoform X20
- UniProtKB/TrEMBL
- B3KQ75, B3KSI6
-
XM_054353330.1 → XP_054209305.1 transcription factor 7 isoform X16
-
XM_054353331.1 → XP_054209306.1 transcription factor 7 isoform X17
-
XM_054353332.1 → XP_054209307.1 transcription factor 7 isoform X19
-
XM_054353333.1 → XP_054209308.1 transcription factor 7 isoform X19
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001134852.1: Suppressed sequence
- Description
- NM_001134852.1: This RefSeq was temporarily suppressed because the CDS may possibly be 5'-partial, and the nature of its 5' end is unclear.