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    Zmym1 zinc finger, MYM domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 68310, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Zmym1provided by MGI
    Official Full Name
    zinc finger, MYM domain containing 1provided by MGI
    Primary source
    MGI:MGI:1915560
    See related
    Ensembl:ENSMUSG00000043872 AllianceGenome:MGI:1915560
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5830412B09Rik
    Summary
    Orthologous to human ZMYM1 (zinc finger MYM-type containing 1). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 5.6), CNS E18 (RPKM 5.5) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Zmym1 in Genome Data Viewer
    Location:
    4 D2.2; 4 61.22 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126940887..126954968, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127047094..127061176, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene expressed sequence AU040320 Neighboring gene STARR-positive B cell enhancer ABC_E4667 Neighboring gene predicted gene, 25604 Neighboring gene zinc finger, MYM-type 4 Neighboring gene STARR-seq mESC enhancer starr_11411 Neighboring gene STARR-positive B cell enhancer ABC_E7989 Neighboring gene STARR-seq mESC enhancer starr_11413 Neighboring gene STARR-seq mESC enhancer starr_11417 Neighboring gene STARR-seq mESC enhancer starr_11418 Neighboring gene STARR-positive B cell enhancer ABC_E9012 Neighboring gene splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) Neighboring gene STARR-seq mESC enhancer starr_11419 Neighboring gene STARR-seq mESC enhancer starr_11420 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene zinc finger, MYM-type 6 Neighboring gene STARR-seq mESC enhancer starr_11421 Neighboring gene predicted gene, 25600 Neighboring gene transmembrane protein 35B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
    2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger MYM-type protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356311.1 → NP_001343240.1  zinc finger MYM-type protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK016783, AK035618, AK167508, AL606985, CF164697
      UniProtKB/TrEMBL
      Q6PG63
      Conserved Domains (2) summary
      pfam05699
      Location:798 → 887
      Dimer_Tnp_hAT; hAT family C-terminal dimerisation region
      pfam14291
      Location:310 → 490
      DUF4371; Domain of unknown function (DUF4371)

    2. NM_026670.5 → NP_080946.3  zinc finger MYM-type protein 1 isoform 1

      See identical proteins and their annotated locations for NP_080946.3

      Status: VALIDATED

      Source sequence(s)
      AK016783, AK035618, AK167508, AL606985, CF164697
      Consensus CDS
      CCDS18663.1
      UniProtKB/TrEMBL
      Q3TJB1, Q6PG63
      Related
      ENSMUSP00000101708.3, ENSMUST00000106102.9
      Conserved Domains (3) summary
      pfam05699
      Location:870 → 959
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam06467
      Location:57 → 96
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam14291
      Location:387 → 568
      DUF4371; Domain of unknown function (DUF4371)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      126940887..126954968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253735.2 → XP_030109595.1  zinc finger MYM-type protein 1 isoform X1

      UniProtKB/TrEMBL
      Q6PG63
      Conserved Domains (2) summary
      pfam05699
      Location:728 → 817
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14291
      Location:245 → 426
      DUF4371; Domain of unknown function (DUF4371)
    Nucleotide Protein Strain
    Heading Accession and Version

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