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    D130007C19Rik RIKEN cDNA D130007C19 gene [ Mus musculus (house mouse) ]

    Gene ID: 442805, updated on 8-Feb-2024

    Summary

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    Official Symbol
    D130007C19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D130007C19 geneprovided by MGI
    Primary source
    MGI:MGI:3045257
    See related
    AllianceGenome:MGI:3045257
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in testis adult (RPKM 3.4), whole brain E14.5 (RPKM 1.0) and 26 other tissues See more

    Genomic context

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    See D130007C19Rik in Genome Data Viewer
    Location:
    4 D2.2; 4 57.42 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (123785865..123811062, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (123902074..123917449, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Riken cDNA 4933427I04 gene Neighboring gene predicted gene, 31309 Neighboring gene STARR-positive B cell enhancer ABC_E2120 Neighboring gene STARR-positive B cell enhancer ABC_E11255 Neighboring gene MYC binding protein Neighboring gene Ras-related GTP binding C Neighboring gene STARR-seq mESC enhancer starr_11317 Neighboring gene predicted gene, 40241

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Breslow DK, et al. Nat Genet, 2018 Mar. PMID 29459677, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      123785865..123811062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004942183.1 RNA Sequence

    2. XR_004942182.1 RNA Sequence

    3. XR_376626.4 RNA Sequence

    4. XR_004942184.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001002773.1: Suppressed sequence

      Description
      NM_001002773.1: This RefSeq was suppressed because the predicted protein product was not well-supported.
    Nucleotide Protein Strain
    Heading Accession and Version

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