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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001310729.1 → NP_001297658.1 E3 ubiquitin-protein ligase Rnf220 isoform 2
See identical proteins and their annotated locations for NP_001297658.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in its 5' UTR, lacks a portion of the 5' coding region, initiates translation at a downstream start codon, and uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (2) has a significantly shorter N-terminus, but contains an alternate internal protein segment compared to isoform 1.
- Source sequence(s)
-
AI837557, BC056359, BY716092, CA463153
- Consensus CDS
-
CCDS80150.1
- UniProtKB/TrEMBL
-
Q9D4L6
- Related
- ENSMUSP00000092449.3, ENSMUST00000094853.9
- Conserved Domains (2) summary
-
- pfam15926
Location:1 → 229
- RNF220; E3 ubiquitin-protein ligase RNF220
- cd16563
Location:300 → 340
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
-
NM_001310730.1 → NP_001297659.1 E3 ubiquitin-protein ligase Rnf220 isoform 3
See identical proteins and their annotated locations for NP_001297659.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in its 5' UTR, lacks a portion of the 5' coding region, initiates translation at an alternate start codon, and uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (3) has a distinct and significantly shorter N-terminus, but contains an alternate internal protein segment compared to isoform 1.
- Source sequence(s)
-
AI837557, AK016436, AL844169, BC056359, CJ105892
- Consensus CDS
-
CCDS89815.1
- UniProtKB/Swiss-Prot
-
Q6PDX6
- UniProtKB/TrEMBL
-
Q9D4L6
- Related
- ENSMUSP00000152367.2, ENSMUST00000221654.2
- Conserved Domains (2) summary
-
- pfam13923
Location:256 → 294
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
- pfam15926
Location:14 → 184
- RNF220; E3 ubiquitin-protein ligase RNF220
-
NM_001310731.1 → NP_001297660.1 E3 ubiquitin-protein ligase Rnf220 isoform 4
See identical proteins and their annotated locations for NP_001297660.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in its 5' UTR, lacks a portion of the 5' coding region, initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (4) has a significantly shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AI837557, AK016436, AL844169, BC056359, BE953159, CJ105892
- Consensus CDS
-
CCDS80149.1
- UniProtKB/Swiss-Prot
-
Q6PDX6
- UniProtKB/TrEMBL
-
Q9D4L6
- Conserved Domains (2) summary
-
- cd16563
Location:192 → 232
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:11 → 121
- RNF220; E3 ubiquitin-protein ligase RNF220
-
NM_025739.3 → NP_080015.3 E3 ubiquitin-protein ligase Rnf220 isoform 1
See identical proteins and their annotated locations for NP_080015.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AI837557, AK041785, BC056359
- Consensus CDS
-
CCDS18534.1
- UniProtKB/Swiss-Prot
- A2APP0, Q3T9M4, Q3V3D7, Q6PDX6, Q8JZY5
- Related
- ENSMUSP00000030439.9, ENSMUST00000030439.15
- Conserved Domains (2) summary
-
- cd16563
Location:513 → 553
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 442
- RNF220; E3 ubiquitin-protein ligase RNF220
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000070.7 Reference GRCm39 C57BL/6J
- Range
-
117128660..117354249 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006503285.3 → XP_006503348.1 E3 ubiquitin-protein ligase Rnf220 isoform X1
See identical proteins and their annotated locations for XP_006503348.1
- Conserved Domains (2) summary
-
- cd16563
Location:539 → 579
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 468
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_036164349.1 → XP_036020242.1 E3 ubiquitin-protein ligase Rnf220 isoform X2
- UniProtKB/Swiss-Prot
- A2APP0, Q3T9M4, Q3V3D7, Q6PDX6, Q8JZY5
- Conserved Domains (2) summary
-
- cd16563
Location:513 → 553
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 442
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_036164348.1 → XP_036020241.1 E3 ubiquitin-protein ligase Rnf220 isoform X2
- UniProtKB/Swiss-Prot
- A2APP0, Q3T9M4, Q3V3D7, Q6PDX6, Q8JZY5
- Conserved Domains (2) summary
-
- cd16563
Location:513 → 553
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 442
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_036164350.1 → XP_036020243.1 E3 ubiquitin-protein ligase Rnf220 isoform X2
- UniProtKB/Swiss-Prot
- A2APP0, Q3T9M4, Q3V3D7, Q6PDX6, Q8JZY5
- Conserved Domains (2) summary
-
- cd16563
Location:513 → 553
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 442
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_011240588.3 → XP_011238890.1 E3 ubiquitin-protein ligase Rnf220 isoform X1
See identical proteins and their annotated locations for XP_011238890.1
- Conserved Domains (2) summary
-
- cd16563
Location:539 → 579
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 468
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_036164347.1 → XP_036020240.1 E3 ubiquitin-protein ligase Rnf220 isoform X2
- UniProtKB/Swiss-Prot
- A2APP0, Q3T9M4, Q3V3D7, Q6PDX6, Q8JZY5
- Conserved Domains (2) summary
-
- cd16563
Location:513 → 553
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 442
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_036164346.1 → XP_036020239.1 E3 ubiquitin-protein ligase Rnf220 isoform X2
- UniProtKB/Swiss-Prot
- A2APP0, Q3T9M4, Q3V3D7, Q6PDX6, Q8JZY5
- Conserved Domains (2) summary
-
- cd16563
Location:513 → 553
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 442
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_011240587.4 → XP_011238889.1 E3 ubiquitin-protein ligase Rnf220 isoform X1
See identical proteins and their annotated locations for XP_011238889.1
- Conserved Domains (2) summary
-
- cd16563
Location:539 → 579
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:219 → 468
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_036164351.1 → XP_036020244.1 E3 ubiquitin-protein ligase Rnf220 isoform X3
- Conserved Domains (2) summary
-
- cd16563
Location:274 → 314
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:1 → 203
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_011240589.4 → XP_011238891.1 E3 ubiquitin-protein ligase Rnf220 isoform X5
See identical proteins and their annotated locations for XP_011238891.1
- UniProtKB/Swiss-Prot
-
Q6PDX6
- Conserved Domains (2) summary
-
- cd16563
Location:192 → 232
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:11 → 121
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_017320356.3 → XP_017175845.1 E3 ubiquitin-protein ligase Rnf220 isoform X4
- Conserved Domains (2) summary
-
- cd16563
Location:229 → 269
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:14 → 158
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_030253704.2 → XP_030109564.1 E3 ubiquitin-protein ligase Rnf220 isoform X5
- Related
- ENSMUSP00000099751.3, ENSMUST00000102690.9
- Conserved Domains (2) summary
-
- cd16563
Location:192 → 232
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:11 → 121
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_030253703.2 → XP_030109563.1 E3 ubiquitin-protein ligase Rnf220 isoform X5
- Conserved Domains (2) summary
-
- cd16563
Location:192 → 232
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:11 → 121
- RNF220; E3 ubiquitin-protein ligase RNF220
-
XM_017320357.3 → XP_017175846.1 E3 ubiquitin-protein ligase Rnf220 isoform X5
- UniProtKB/Swiss-Prot
-
Q6PDX6
- Conserved Domains (2) summary
-
- cd16563
Location:192 → 232
- RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
- pfam15926
Location:11 → 121
- RNF220; E3 ubiquitin-protein ligase RNF220
RNA
-
XR_004941948.1 RNA Sequence