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    9430038I01Rik RIKEN cDNA 9430038I01 gene [ Mus musculus (house mouse) ]

    Gene ID: 77252, updated on 28-Oct-2024

    Summary

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    Official Symbol
    9430038I01Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9430038I01 geneprovided by MGI
    Primary source
    MGI:MGI:1924502
    See related
    Ensembl:ENSMUSG00000040139 AllianceGenome:MGI:1924502
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C10orf143 (chromosome 10 open reading frame 143). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in small intestine adult (RPKM 7.0), duodenum adult (RPKM 5.8) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 9430038I01Rik in Genome Data Viewer
    Location:
    7 F4; 7 82.32 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (136977298..137013972, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (137375569..137412242, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene early B cell factor 3 Neighboring gene STARR-seq mESC enhancer starr_20382 Neighboring gene predicted gene 10578 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:144481070-144481271 Neighboring gene STARR-seq mESC enhancer starr_20383 Neighboring gene nucleolin pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2852 Neighboring gene STARR-seq mESC enhancer starr_20385 Neighboring gene STARR-seq mESC enhancer starr_20386 Neighboring gene STARR-seq mESC enhancer starr_20387 Neighboring gene STARR-seq mESC enhancer starr_20388 Neighboring gene glutaredoxin 3 Neighboring gene STARR-seq mESC enhancer starr_20391 Neighboring gene STARR-positive B cell enhancer ABC_E6613 Neighboring gene RIKEN cDNA 4930570E01 gene Neighboring gene STARR-seq mESC enhancer starr_20392 Neighboring gene predicted gene, 51411

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C10orf143 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029886.2 → NP_084162.1  uncharacterized protein C10orf143 homolog

      See identical proteins and their annotated locations for NP_084162.1

      Status: VALIDATED

      Source sequence(s)
      AK020460, AK078159, AV013327, BY148312
      Consensus CDS
      CCDS52424.1
      UniProtKB/Swiss-Prot
      Q9CX25
      UniProtKB/TrEMBL
      G5E8T7
      Related
      ENSMUSP00000070550.7, ENSMUST00000068996.13

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      136977298..137013972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153558.1 → XP_036009451.1  uncharacterized protein C10orf143 homolog isoform X6

    2. XM_030243094.2 → XP_030098954.1  uncharacterized protein C10orf143 homolog isoform X4

      UniProtKB/TrEMBL
      D3YTU4
      Related
      ENSMUSP00000112892.2, ENSMUST00000117404.8

    3. XM_011241949.4 → XP_011240251.1  uncharacterized protein C10orf143 homolog isoform X2

    4. XM_006508331.5 → XP_006508394.1  uncharacterized protein C10orf143 homolog isoform X5

    5. XM_006508329.5 → XP_006508392.1  uncharacterized protein C10orf143 homolog isoform X3

    6. XM_011241948.4 → XP_011240250.1  uncharacterized protein C10orf143 homolog isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CX25.1 GenPept UniProtKB/Swiss-Prot:Q9CX25

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