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    FMO9P flavin containing dimethylaniline monoxygenase 9, pseudogene [ Homo sapiens (human) ]

    Gene ID: 116123, updated on 22-Oct-2024

    Summary

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    Official Symbol
    FMO9Pprovided by HGNC
    Official Full Name
    flavin containing dimethylaniline monoxygenase 9, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:32210
    See related
    Ensembl:ENSG00000290604 AllianceGenome:HGNC:32210
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in urinary bladder (RPKM 4.8) and esophagus (RPKM 0.3) See more
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    Genomic context

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    See FMO9P in Genome Data Viewer
    Location:
    1q24.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (166603916..166625238)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (165949825..165971136)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (166573153..166594475)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1675 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2026 Neighboring gene flavin containing dimethylaniline monoxygenase 7, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:166546309-166547508 Neighboring gene flavin containing dimethylaniline monoxygenase 8, pseudogene Neighboring gene flavin containing dimethylaniline monoxygenase 10, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:166644091-166645290 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:166687833-166687935 Neighboring gene ribosomal protein L4 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Organization and evolution of the flavin-containing monooxygenase genes of human and mouse: identification of novel gene and pseudogene clusters. Hernandez D, et al. Pharmacogenetics, 2004 Feb. PMID 15077013
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • RP11-45J16.2
    • flavin containing monooxygenase 9, pseudogene

    Clone Names

    • MGC23941

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002925.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BC014341
      Related
      ENST00000477875.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      166603916..166625238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      165949825..165971136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_138784.1: Suppressed sequence

      Description
      NM_138784.1: This RefSeq was permanently suppressed because this locus represents a pseudogene rather than a protein coding gene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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