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    LINC02070 long intergenic non-protein coding RNA 2070 [ Homo sapiens (human) ]

    Gene ID: 101927494, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02070provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2070provided by HGNC
    Primary source
    HGNC:HGNC:52916
    See related
    Ensembl:ENSG00000241328 AllianceGenome:HGNC:52916
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC02070 in Genome Data Viewer
    Location:
    3p12.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (86481943..86496996)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (86553882..86568933)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (86531093..86546146)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723364 Neighboring gene RNA, U6 small nuclear 1129, pseudogene Neighboring gene RN7SK pseudogene 284 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:86529880-86531079 Neighboring gene NANOG hESC enhancer GRCh37_chr3:86673295-86673796 Neighboring gene uncharacterized LOC101927518 Neighboring gene MPRA-validated peak4735 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:86925274-86925774 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:86940033-86940783 Neighboring gene uncharacterized LOC105377196 Neighboring gene MPRA-validated peak4737 silencer

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135563.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC035252
      Related
      ENST00000460586.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      86481943..86496996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      86553882..86568933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)