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    LOC4329507 uncharacterized LOC4329507 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329507, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329507
    Gene description
    uncharacterized LOC4329507
    Locus tag
    OSNPB_020523300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0415B12.3
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    Genomic context

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    See LOC4329507 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19568708..19575129, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19090974..19097426, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC107278022 Neighboring gene ribonuclease TUDOR 1 Neighboring gene inositol polyphosphate multikinase IPK2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule minus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in equatorial microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of gamma-tubulin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329507
    Names
    OSJNBa0047A17.31
    Os02g0523300
    gamma-tubulin complex component 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19568708..19575129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771148.3 → XP_015626634.2  uncharacterized protein LOC4329507 isoform X1

    2. XM_015771151.3 → XP_015626637.1  uncharacterized protein LOC4329507 isoform X3

      UniProtKB/TrEMBL
      A0A0P0VJP8
      Conserved Domains (2) summary
      pfam04130
      Location:627 → 937
      Spc97_Spc98; Spc97 / Spc98 family
      pfam17681
      Location:21 → 291
      GCP_N_terminal; Gamma tubulin complex component N-terminal

    3. XM_015771149.3 → XP_015626635.1  uncharacterized protein LOC4329507 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VJP8, Q6H548
      Conserved Domains (2) summary
      pfam04130
      Location:703 → 1013
      Spc97_Spc98; Spc97 / Spc98 family
      pfam17681
      Location:48 → 367
      GCP_N_terminal; Gamma tubulin complex component N-terminal
    Nucleotide Protein
    Heading Accession and Version

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