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    LOC4341282 small ribosomal subunit protein eS24z [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341282, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341282
    Gene description
    small ribosomal subunit protein eS24z
    Locus tag
    OSNPB_060555400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 191.8), flowers (RPKM 127.6) and 6 other tissues See more
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    Genomic context

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    See LOC4341282 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22021801..22025692)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21163223..21167157)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 42-like Neighboring gene uncharacterized LOC112939301 Neighboring gene tRNA A64-2'-O-ribosylphosphate transferase Neighboring gene amino acid permease 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS24z
    Names
    40S ribosomal protein S24-1
    Os06g0555400
    P0458E11.17
    putative 40S ribosomal protein S24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      22021801..22025692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788209.2 → XP_015643695.1  small ribosomal subunit protein eS24z

      UniProtKB/TrEMBL
      A2ZXD8, B8B3L8, B9FTR3, Q5Z9S4
      Conserved Domains (1) summary
      PTZ00071
      Location:5 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional
    Nucleotide Protein
    Heading Accession and Version

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