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    LOC4346475 sulfate transporter 4.1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346475, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346475
    Gene description
    sulfate transporter 4.1, chloroplastic
    Locus tag
    OSNPB_090240500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1178_D01.11-1; OJ1178_D01.11-2; OJ1178_D01.11-3
    Expression
    Ubiquitous expression in roots after flowering (RPKM 16.1), leaves after flowering (RPKM 14.2) and 6 other tissues See more
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    Genomic context

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    See LOC4346475 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (7419961..7438825)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3073978..3092836)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351853 Neighboring gene small nucleolar RNA R71 Neighboring gene zinc finger protein CO3-like Neighboring gene uncharacterized LOC136351800 Neighboring gene protein ENHANCER OF LHP1 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables secondary active sulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sulfate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sulfate transporter 4.1, chloroplastic
    Names
    Os09g0240500
    putative sulfate transporter
    sulfate transporter-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      7419961..7438825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756986.3 → XP_015612472.1  sulfate transporter 4.1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XJS6, Q68UR2, Q8S317
      Conserved Domains (1) summary
      TIGR00815
      Location:65 → 621
      sulP; high affinity sulphate transporter 1
    Nucleotide Protein
    Heading Accession and Version

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