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    LOC4331003 protein NCA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331003, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331003
    Gene description
    protein NCA1
    Locus tag
    OSNPB_020795300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1695_H09.11
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 85.8), roots after flowering (RPKM 70.8) and 6 other tissues See more
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    Genomic context

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    See LOC4331003 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34303182..34307888, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33807049..33811777, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 23 Neighboring gene protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION Neighboring gene protein neprosin-like Neighboring gene protein neprosin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NCA1
    Names
    Os02g0795300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34303182..34307888 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771541.3 → XP_015627027.1  protein NCA1

      UniProtKB/TrEMBL
      A0A0P0VQW4, B7EI81, B9F404, Q6K8Z1
      Conserved Domains (3) summary
      sd00006
      Location:214 → 251
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:210 → 289
      TPR_12; Tetratricopeptide repeat
      cl17238
      Location:73 → 109
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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