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    LOC4325409 protein CLT1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325409, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325409
    Gene description
    protein CLT1, chloroplastic
    Locus tag
    OSNPB_010955700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 13.3), flower buds (RPKM 8.8) and 6 other tissues See more
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    Genomic context

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    See LOC4325409 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42738527..42748014)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42086416..42095973)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative calcium-binding protein CML23 Neighboring gene putative calcium-binding protein CML19 Neighboring gene uncharacterized LOC107276077 Neighboring gene U-box domain-containing protein 14 Neighboring gene xylan glycosyltransferase MUCI21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein CLT1, chloroplastic
    Names
    B1139B11.22
    Os01g0955700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42738527..42748014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766014.3 → XP_015621500.1  protein CLT1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VCX8, B9EWI4
      Conserved Domains (1) summary
      cl23754
      Location:108 → 420
      EamA; EamA-like transporter family

    RNA

    1. XR_001542483.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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