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    LOC4349772 peptidyl-prolyl cis-trans isomerase FKBP42 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349772, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349772
    Gene description
    peptidyl-prolyl cis-trans isomerase FKBP42
    Locus tag
    OSNPB_110148300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.6), leaves after flowering (RPKM 16.5) and 6 other tissues See more
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    Genomic context

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    See LOC4349772 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2275067..2279154)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2229810..2233902)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene cation/calcium exchanger 5 Neighboring gene protein trichome birefringence-like 10 Neighboring gene uncharacterized LOC4349773 Neighboring gene pyruvate kinase 1, cytosolic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase FKBP42
    Names
    Os11g0148300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2275067..2279154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761347.3 → XP_015616833.1  peptidyl-prolyl cis-trans isomerase FKBP42

      UniProtKB/TrEMBL
      A0A8J8Y193, A3C8M6, B8BIF6, Q2RAK4
      Conserved Domains (3) summary
      TIGR00990
      Location:182 → 344
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:242 → 271
      TPR; TPR repeat [structural motif]
      pfam00254
      Location:74 → 168
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
    Nucleotide Protein
    Heading Accession and Version

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