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    LOC4336813 uncharacterized LOC4336813 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336813, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4336813
    Gene description
    uncharacterized LOC4336813
    Locus tag
    OSNPB_040589600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336813 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30309150..30312075)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29803042..29805994)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280659 Neighboring gene uncharacterized LOC4336812 Neighboring gene E3 ubiquitin-protein ligase PUB23 Neighboring gene late embryogenesis abundant protein 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-1,3-mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4336813
    Names
    Os04g0589600
    alpha-1,3/1,6-mannosyltransferase ALG2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30309150..30312075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780245.3 → XP_015635731.1  uncharacterized protein LOC4336813

      UniProtKB/TrEMBL
      A2XWY6, A3AWW3, Q7XLZ9
      Conserved Domains (1) summary
      cd03805
      Location:20 → 405
      GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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