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    LOC4328235 uncharacterized LOC4328235 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328235, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4328235
    Gene description
    uncharacterized LOC4328235
    Locus tag
    OSNPB_020137100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 27.3), roots after flowering (RPKM 21.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328235 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1975342..1980383)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1967703..1973188)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328232 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 1 Neighboring gene uncharacterized LOC4328234 Neighboring gene large ribosomal subunit protein uL3c Neighboring gene spliceosome-associated protein 130 A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328235
    Names
    OSJNBa0026E05.3
    OSJNBa0081C13.27
    Os02g0137100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1975342..1980383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769875.3 → XP_015625361.1  uncharacterized protein LOC4328235 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VEH5, B8AHD5, B9F2M1, Q0E447, Q6YXY6
      Conserved Domains (1) summary
      pfam09713
      Location:26 → 75
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    2. XM_015769876.3 → XP_015625362.1  uncharacterized protein LOC4328235 isoform X2

      UniProtKB/TrEMBL
      B8AHD5, B9F2M1, Q6YXY6
      Conserved Domains (1) summary
      pfam09713
      Location:26 → 75
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)
    Nucleotide Protein
    Heading Accession and Version

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