LOC9268260 auxin response factor 15-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC9268260
Gene description: auxin response factor 15-like
Locus tag: OSNPB_050563400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: ARF15; OsETTIN1; OsJ_018762
Expression: Ubiquitous expression in leaves before flowering (RPKM 23.4), flower buds (RPKM 14.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	5	NC_089039.1 (28219102..28224659)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (28034340..28039807)

Chromosome 5 - NC_089039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed
involved_in response to hormone	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: auxin response factor 15

Names: ETTIN-like protein 1; LOC_Os05g48870; OSJNBb0053D02.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001424250.1 → NP_001411179.1 auxin response factor 15

Status: VALIDATED

Source sequence(s)

AK062170, AP014961, AU069424, CB650895, CF303807, CF309354, CI760709

UniProtKB/Swiss-Prot

A0A0P0WQX2, B7E789, B9FLM0, Q0DFY3, Q6AUG6, Q8S985

UniProtKB/TrEMBL

B8AWQ8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089039.1 Reference ASM3414082v1 Primary Assembly

Range

28219102..28224659

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026025637.2 → XP_025881422.1 auxin response factor 15 isoform X1

UniProtKB/TrEMBL

B8AWQ8

Conserved Domains (2) summary

pfam02362
Location:142 → 243

B3; B3 DNA binding domain

pfam06507
Location:268 → 348

Auxin_resp; Auxin response factor