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    PRX112 Peroxidase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344279, updated on 13-Jul-2024

    Summary

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    Gene symbol
    PRX112
    Gene description
    Peroxidase 2
    Locus tag
    OSNPB_070677200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    POXGX9; prx111; OsJ_25570; peroxidase; OJ1409_C08.1; OJ1167_G06.125; OJ1167_G06.126
    Expression
    Biased expression in milk grains (RPKM 34.6), roots before flowering (RPKM 28.7) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28907407..28909007)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28673742..28680033)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357323 Neighboring gene peroxidase 2-like Neighboring gene uncharacterized LOC124849265 Neighboring gene uncharacterized LOC4344281

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Complementary DNA cloning and sequence analysis of a pathogen-induced putative peroxidase from rice. Reimmann C, et al. Plant Physiol, 1992 Nov. PMID 16653172, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidase 2
    Names
    LOC_Os07g48030
    Os07g0677200
    class III peroxidase 111
    NP_001390195.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403266.1 → NP_001390195.1  peroxidase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      CB655642, CI078191, CI175597, CI377230, CI572082
      UniProtKB/Swiss-Prot
      O22438, Q0D3N1, Q43006, Q7F1U0
      UniProtKB/TrEMBL
      B9FUV8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28907407..28909007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D3N0.1 GenPept UniProtKB/Swiss-Prot:Q0D3N0

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