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    LOC4332538 eukaryotic translation initiation factor 2 subunit alpha homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332538, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4332538
    Gene description
    eukaryotic translation initiation factor 2 subunit alpha homolog
    Locus tag
    OSNPB_030296400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 62.6), leaves after flowering (RPKM 46.6) and 6 other tissues See more
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    Genomic context

    See LOC4332538 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10423783..10426860)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10372816..10375993)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271382 Neighboring gene mitochondrial import inner membrane translocase subunit TIM22-4 Neighboring gene glucan endo-1,3-beta-glucosidase 9 Neighboring gene egg cell-secreted protein 1.3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of eukaryotic 48S preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of eukaryotic translation initiation factor 2 complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    eukaryotic translation initiation factor 2 subunit alpha homolog
    Names
    Os03g0296400

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10423783..10426860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776562.3XP_015632048.1  eukaryotic translation initiation factor 2 subunit alpha homolog

      UniProtKB/TrEMBL
      A0A8J8YMS4, A2XFL2, A3AGZ9, Q0DSP5, Q10MT2, Q2WEA7
      Conserved Domains (1) summary
      PTZ00248
      Location:2323
      PTZ00248; eukaryotic translation initiation factor 2 subunit 1; Provisional