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    LOC4327957 nucleotide pyrophosphatase/phosphodiesterase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327957, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327957
    Gene description
    nucleotide pyrophosphatase/phosphodiesterase
    Locus tag
    OSNPB_010800500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 19.6), flowers (RPKM 6.7) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34503689..34511103)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33897153..33904428)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327955 Neighboring gene pentatricopeptide repeat-containing protein At1g33350 Neighboring gene uncharacterized LOC107277329 Neighboring gene uncharacterized LOC4327959

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleotide pyrophosphatase/phosphodiesterase
    Names
    Os01g0800500
    P0003D09.8-1
    P0003D09.8-2
    P0691E06.40-1
    P0691E06.40-2
    putative diphosphonucleotide phosphatase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34503689..34511103
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765889.3 → XP_015621375.1  nucleotide pyrophosphatase/phosphodiesterase

      UniProtKB/TrEMBL
      A0A0N7KDX0, B8AAW1, Q7F4M0, Q8S2H5
      Conserved Domains (3) summary
      cd00839
      Location:317 → 627
      MPP_PAPs; purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain
      pfam17808
      Location:72 → 202
      fn3_PAP; Fn3-like domain from Purple Acid Phosphatase
      pfam16656
      Location:206 → 309
      Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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