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    LOC4331827 polyadenylate-binding protein-interacting protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331827, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331827
    Gene description
    polyadenylate-binding protein-interacting protein 7
    Locus tag
    OSNPB_030180300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 31.3), leaves before flowering (RPKM 28.3) and 6 other tissues See more
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    Genomic context

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    See LOC4331827 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4214005..4220746)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4203317..4210238)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cation/calcium exchanger 4 Neighboring gene uncharacterized LOC4331826 Neighboring gene proteasome subunit alpha type-6-like Neighboring gene uncharacterized LOC4331829

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polyadenylate-binding protein-interacting protein 7
    Names
    Os03g0180300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4214005..4220746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774863.3 → XP_015630349.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0
      Conserved Domains (2) summary
      pfam07145
      Location:17 → 29
      PAM2; Ataxin-2 C-terminal region
      cl02619
      Location:439 → 512
      Smr; Smr domain

    2. XM_066308363.1 → XP_066164460.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    3. XM_015774861.3 → XP_015630347.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0
      Conserved Domains (2) summary
      pfam07145
      Location:17 → 29
      PAM2; Ataxin-2 C-terminal region
      cl02619
      Location:439 → 512
      Smr; Smr domain

    4. XM_015774862.3 → XP_015630348.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0
      Conserved Domains (2) summary
      pfam07145
      Location:17 → 29
      PAM2; Ataxin-2 C-terminal region
      cl02619
      Location:439 → 512
      Smr; Smr domain

    5. XM_066308366.1 → XP_066164463.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    6. XM_066308364.1 → XP_066164461.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    7. XM_066308368.1 → XP_066164465.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    8. XM_066308365.1 → XP_066164462.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    9. XM_066308370.1 → XP_066164467.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    10. XM_015774860.3 → XP_015630346.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0
      Conserved Domains (2) summary
      pfam07145
      Location:17 → 29
      PAM2; Ataxin-2 C-terminal region
      cl02619
      Location:439 → 512
      Smr; Smr domain

    11. XM_066308369.1 → XP_066164466.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0

    12. XM_066308367.1 → XP_066164464.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A8J8YQ86, B8APN5, B9F5I3, Q0DUL3, Q10QX0
    Nucleotide Protein
    Heading Accession and Version

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