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    LOC4329905 vesicle transport protein GOT1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329905, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329905
    Gene description
    vesicle transport protein GOT1
    Locus tag
    OSNPB_020602800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1669_F01.17
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    Genomic context

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    See LOC4329905 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24080318..24084144)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23597820..23601647)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329902 Neighboring gene UBP1-associated protein 2B Neighboring gene protein VERNALIZATION 3-like Neighboring gene uncharacterized LOC4329906 Neighboring gene serine/threonine-protein kinase OXI1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Dual Roles of the Golgi Transport 1 (GOT1B): RNA Localization to the Cortical Endoplasmic Reticulum and the Export of Proglutelin and α-Globulin from the Cortical ER to the Golgi. Fukuda M, et al. Plant Cell Physiol, 2016 Nov. PMID 27565205
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. GLUP2/GOT1B has a dual role during rice endosperm development.
      Title: The Dual Roles of the Golgi Transport 1 (GOT1B): RNA Localization to the Cortical Endoplasmic Reticulum and the Export of Proglutelin and α-Globulin from the Cortical ER to the Golgi.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle transport protein GOT1
    Names
    NFkB activating protein-like
    Os02g0602800
    vesicle transport protein GOT1B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24080318..24084144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022679.2 → XP_025878464.1  vesicle transport protein GOT1

      UniProtKB/TrEMBL
      A0A0P0VLH8, Q6K8K1
      Conserved Domains (1) summary
      cl02130
      Location:5 → 120
      Got1; Got1/Sft2-like family

    2. XM_015767821.3 → XP_015623307.1  vesicle transport protein GOT1

      UniProtKB/TrEMBL
      A0A0P0VLH8, Q6K8K1
      Conserved Domains (1) summary
      cl02130
      Location:5 → 120
      Got1; Got1/Sft2-like family
    Nucleotide Protein
    Heading Accession and Version

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