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    LOC4336542 homeobox-leucine zipper protein HOX22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336542, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336542
    Gene description
    homeobox-leucine zipper protein HOX22
    Locus tag
    OSNPB_040541700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Hox22; OsHox22; OsJ_014981
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    Genomic context

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    See LOC4336542 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27629111..27630450)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27124152..27125493)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene trihelix transcription factor GTL1 Neighboring gene sphingoid long-chain bases kinase 1 Neighboring gene uncharacterized membrane protein At1g16860 Neighboring gene protein S40-7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein HOX22
    Names
    HD-ZIP protein HOX22
    Homeodomain transcription factor HOX22
    LOC_Os04g45810
    OSJNBb0103I08.6
    homeodomain leucine zipper protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402404.1 → NP_001389333.1  homeobox-leucine zipper protein HOX22

      Status: VALIDATED

      Source sequence(s)
      AK109177, AU057928, CI636321
      UniProtKB/Swiss-Prot
      A2XW07, A5JPW0, Q01IK0, Q0JBC7, Q6Q7E2, Q7XUJ5, Q84PC3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27629111..27630450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XUJ5.2 GenPept UniProtKB/Swiss-Prot:Q7XUJ5

    Gene LinkOut

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    Research Materials