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    LOC4350869 small ribosomal subunit protein uS4y [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350869, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4350869
    Gene description
    small ribosomal subunit protein uS4y
    Locus tag
    OSNPB_110602600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350869 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25133321..25136362)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23184389..23187562)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable tRNA-splicing endonuclease subunit Sen2 Neighboring gene small ribosomal subunit protein uS4y Neighboring gene uncharacterized LOC4350870 Neighboring gene F-box/kelch-repeat protein SKIP11-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS4y
    Names
    40S ribosomal protein S9-2
    Os11g0602600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25133321..25136362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761487.3 → XP_015616973.1  small ribosomal subunit protein uS4y

      UniProtKB/TrEMBL
      A2ZFU3, B9G897, Q0IRR9, Q2R1J7, Q2R1J8
      Conserved Domains (1) summary
      PLN00189
      Location:1 → 183
      PLN00189; 40S ribosomal protein S9; Provisional
    Nucleotide Protein
    Heading Accession and Version

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