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    LOC4341219 T-complex protein 1 subunit gamma [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341219, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341219
    Gene description
    T-complex protein 1 subunit gamma
    Locus tag
    OSNPB_060538000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 53.9), flowers (RPKM 41.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21015071..21022027)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20158628..20165608)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 5 Neighboring gene uncharacterized LOC112939279 Neighboring gene uncharacterized LOC4341220 Neighboring gene uncharacterized LOC4341221

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chaperonin-containing T-complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-complex protein 1 subunit gamma
    Names
    Os06g0538000
    P0551A03.30
    putative CCT chaperonin gamma subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21015071..21022027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788576.3 → XP_015644062.1  T-complex protein 1 subunit gamma

      UniProtKB/TrEMBL
      A0A0P0WXV6, B8B3C8, B9FTM3, Q5Z6U5
      Conserved Domains (1) summary
      TIGR02344
      Location:6 → 531
      chap_CCT_gamma; T-complex protein 1, gamma subunit
    Nucleotide Protein
    Heading Accession and Version

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