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    LOC4326310 ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326310, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326310
    Gene description
    ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like
    Locus tag
    OSNPB_010574400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FTSH4; OsFTSH4; OsJ_002240
    Expression
    Ubiquitous expression in flower buds (RPKM 21.5), leaves after flowering (RPKM 21.4) and 6 other tissues See more
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    Genomic context

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    See LOC4326310 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22645240..22650704)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22074388..22079828)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 24 Neighboring gene LOB domain-containing protein 22 Neighboring gene ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like Neighboring gene glyoxylate/succinic semialdehyde reductase 2, chloroplastic Neighboring gene probable pyridoxal 5'-phosphate synthase subunit PDX1.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aTP-dependent zinc metalloprotease FTSH 4, mitochondrial
    Names
    ATP-dependent zinc metalloprotease FTSH 4, mitochondrial
    B1151A10.24-1
    B1151A10.24-2
    LOC_Os01g39250
    cell division protein(FtsH) -like
    cell division protein-like
    NP_001388576.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401647.1 → NP_001388576.1  aTP-dependent zinc metalloprotease FTSH 4, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK072509, AP014957, CI178023, CI746587
      UniProtKB/Swiss-Prot
      A0A0P0V4D2, Q8LQJ9
      UniProtKB/TrEMBL
      A2WRN7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22645240..22650704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LQJ9.1 GenPept UniProtKB/Swiss-Prot:Q8LQJ9

    Gene LinkOut

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