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    LOC4347802 nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347802, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347802
    Gene description
    nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic-like
    Locus tag
    OSNPB_090553600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_30273
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 40.5), roots after flowering (RPKM 39.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26375426..26379398)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21930978..21934948)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene histone H4 Neighboring gene UTP--glucose-1-phosphate uridylyltransferase Neighboring gene nudix hydrolase 23, chloroplastic Neighboring gene uncharacterized LOC4347803 Neighboring gene uncharacterized LOC4347804

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nicotinate-nucleotide diphosphorylase (carboxylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NAD biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in quinolinate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic
    Names
    LOC_Os09g38060
    Quinolinate phosphoribosyltransferase
    NP_001409865.1
    XP_015612687.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422936.1 → NP_001409865.1  nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK068240, CI086268, CI092842, CI616315
      UniProtKB/Swiss-Prot
      A0A0P0XQA2, Q0IZS0
      UniProtKB/TrEMBL
      B8BEC2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26375426..26379398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757201.3 → XP_015612687.1  nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XQA2, Q0IZS0
      UniProtKB/TrEMBL
      B8BEC2
      Conserved Domains (1) summary
      PLN02716
      Location:52 → 359
      PLN02716; nicotinate-nucleotide diphosphorylase (carboxylating)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IZS0.1 GenPept UniProtKB/Swiss-Prot:Q0IZS0

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