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    LOC4326363 probable transcription factor GLK2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326363, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326363
    Gene description
    probable transcription factor GLK2
    Locus tag
    OSNPB_010239000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GLK2; OsGLK2
    Expression
    Broad expression in roots after flowering (RPKM 31.4), leaves after flowering (RPKM 30.7) and 4 other tissues See more
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    Genomic context

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    See LOC4326363 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7698191..7705275, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7686899..7693987, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene uncharacterized LOC4326362 Neighboring gene uncharacterized LOC107281439 Neighboring gene uncharacterized LOC4326364

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable transcription factor GLK2
    Names
    Golden2-like protein 2
    LOC_Os01g13740
    OSJNBa0086P08.28-1
    OSJNBa0086P08.28-2
    putative transcription factor OsGLK2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397945.1 → NP_001384874.1  probable transcription factor GLK2

      Status: VALIDATED

      Source sequence(s)
      AK109503, AK121019, CI287279, CI578192
      UniProtKB/Swiss-Prot
      A0A0P0V0C1, Q5NAN4, Q5NAN5
      Conserved Domains (1) summary
      PLN03162
      Location:149 → 533
      PLN03162; golden-2 like transcription factor; Provisional

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7698191..7705275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760427.3 → XP_015615913.1  probable transcription factor GLK2 isoform X1

      Conserved Domains (1) summary
      PLN03162
      Location:149 → 531
      PLN03162; golden-2 like transcription factor; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NAN5.1 GenPept UniProtKB/Swiss-Prot:Q5NAN5

    Gene LinkOut

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