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    LOC9270755 protein NOI4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270755, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9270755
    Gene description
    protein NOI4
    Locus tag
    OSNPB_060286375
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Pizh_7; Pi50_NIP; P0649C11.4
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 296.8), roots after flowering (RPKM 251.3) and 5 other tissues See more
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    Genomic context

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    See LOC9270755 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (10549227..10551900)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (10372157..10374946)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene DNA oxidative demethylase ALKBH2 Neighboring gene sister chromatid cohesion protein PDS5 homolog A Neighboring gene putative disease resistance RPP13-like protein 3 Neighboring gene disease resistance protein PIK6-NP-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NOI4
    Names
    Os06g0286375
    nitrate-induced NOI protein-like protein
    putative nitrate-induced NOI protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      10549227..10551900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788423.3 → XP_015643909.1  protein NOI4

      UniProtKB/TrEMBL
      A0A0K0WRR9, A0A8J8XUU9, A1XFD3, B9FSS9, Q5VN82
      Conserved Domains (1) summary
      pfam05627
      Location:4 → 39
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr
    Nucleotide Protein
    Heading Accession and Version

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