U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4342214 MADS-box transcription factor 15-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342214, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4342214
    Gene description
    MADS-box transcription factor 15-like
    Locus tag
    OSNPB_070108900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RAP1A; MADS15; FDRMADS3; OsMADS15; RMADS215; OJ1567_G09.109-1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4342214 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (481124..487551, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (471228..477650, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene two pore potassium channel b-like Neighboring gene uncharacterized LOC107281556 Neighboring gene transfer RNA aspartic acid (anticodon GUC)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses. Wu F, et al. Plant J, 2017 Jan. PMID 27689766
    2. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice. Ren D, et al. Plant Physiol, 2013 Jun. PMID 23629832, Free PMC Article
    3. Isolation and characterization of rice MADS box gene homologues and their RFLP mapping. Shinozuka Y, et al. DNA Res, 1999 Apr 30. PMID 10382970
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MADS15 role during the development of rice florets.
      Title: The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    mADS-box transcription factor 15
    Names
    LOC_Os07g01820
    MADS box-like protein
    MADS-box protein RMADS215
    MADS-box transcription factor 15
    P0585H11.124-1
    Protein APETALA1-like A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402985.1 → NP_001389914.1  mADS-box transcription factor 15 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB003325, C74564, CI218536, CI603813, EG709725
      UniProtKB/TrEMBL
      D3U2H5

    2. NM_001402986.1 → NP_001389915.1  mADS-box transcription factor 15 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AY551920, C74564, CI151107, CI603813, EG709725
      UniProtKB/Swiss-Prot
      Q0D939, Q6Q9I2, Q7XIU8, Q947B8, Q9SEW9, Q9XJ63

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      481124..487551 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789775.3 → XP_015645261.1  mADS-box transcription factor 15 isoform X1

      Conserved Domains (2) summary
      cd00265
      Location:2 → 76
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:84 → 173
      K-box; K-box region

    2. XM_015789776.3 → XP_015645262.1  mADS-box transcription factor 15 isoform X2

      Conserved Domains (2) summary
      cd00265
      Location:2 → 76
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:90 → 171
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Q9I2.2 GenPept UniProtKB/Swiss-Prot:Q6Q9I2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.