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    LOC4337750 hydrophobic protein LTI6B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337750, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337750
    Gene description
    hydrophobic protein LTI6B-like
    Locus tag
    OSNPB_050138300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DRR2; LTI6B; R1G1B
    Expression
    Broad expression in roots before flowering (RPKM 738.7), mature seeds (RPKM 401.9) and 6 other tissues See more
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    Genomic context

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    See LOC4337750 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2233690..2235090, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2219670..2220840, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable glycosidase CRH2 Neighboring gene chitinase 10-like Neighboring gene uncharacterized LOC136356475 Neighboring gene uncharacterized LOC136356474

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature. Morsy MR, et al. Gene, 2005 Jan 3. PMID 15656983
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    hydrophobic protein LTI6B
    Names
    LOC_Os05g04700
    Low temperature-induced protein 6B
    OSJNBa0069I13.6
    drought-induced hydrophobic protein
    low temperature-induced low molecular weight integral membrane protein LTI6b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402483.1 → NP_001389412.1  hydrophobic protein LTI6B

      Status: VALIDATED

      Source sequence(s)
      AP014961, CF281601, CF308489, CI294202
      UniProtKB/TrEMBL
      A0A0P0WHN6, Q6AT94

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      2233690..2235090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DKW8.1 GenPept UniProtKB/Swiss-Prot:Q0DKW8

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