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    LOC4337457 probable CCR4-associated factor 1 homolog 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337457, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337457
    Gene description
    probable CCR4-associated factor 1 homolog 11
    Locus tag
    OSNPB_040684900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337457 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35500694..35501915)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34980583..34981831)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein GL2-INTERACTING REPRESSOR 1 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1C Neighboring gene transcription repressor OFP13 Neighboring gene ribosome biogenesis regulatory protein homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable CCR4-associated factor 1 homolog 11
    Names
    Os04g0684900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      35500694..35501915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780420.3 → XP_015635906.1  probable CCR4-associated factor 1 homolog 11

      UniProtKB/TrEMBL
      A0A0P0WGN7, A0A8J8XY44, A2XZ51, A3AYT4, Q259T7, Q7XPU5
      Conserved Domains (1) summary
      cl23804
      Location:56 → 311
      CAF1; CAF1 family ribonuclease
    Nucleotide Protein
    Heading Accession and Version

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