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    LOC4336983 gamma-aminobutyrate transaminase 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336983, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4336983
    Gene description
    gamma-aminobutyrate transaminase 1, mitochondrial-like
    Locus tag
    OSNPB_040614600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSL2; OsJ_16145
    Expression
    Ubiquitous expression in flowers (RPKM 91.4), flower buds (RPKM 79.9) and 6 other tissues See more
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    Genomic context

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    See LOC4336983 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31684306..31690102)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31176650..31182433)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277025 Neighboring gene probable gamma-aminobutyrate transaminase 2, mitochondrial Neighboring gene COP1-interactive protein 1 Neighboring gene Protein NARROW LEAF 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. Lee RH, et al. J Exp Bot, 2001 May. PMID 11432928
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenosylmethionine-8-amino-7-oxononanoate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biotin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamma-aminobutyric acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gamma-aminobutyrate transaminase 1, mitochondrial
    Names
    LOC_Os04g52450
    OSJNBa0008M17.4
    putative aminotransferase
    NP_001389357.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402428.1 → NP_001389357.1  gamma-aminobutyrate transaminase 1, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK102306, CB644806, CI615487
      UniProtKB/Swiss-Prot
      A0A0P0WER1, B8AU59, Q01K11, Q71SH3, Q7XN11

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31684306..31690102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XN11.2 GenPept UniProtKB/Swiss-Prot:Q7XN11

    Gene LinkOut

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