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    LOC4341894 EH domain-containing protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341894, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341894
    Gene description
    EH domain-containing protein 1
    Locus tag
    OSNPB_060687800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0661G04.5
    Expression
    Ubiquitous expression in roots before flowering (RPKM 34.6), flower buds (RPKM 20.7) and 6 other tissues See more
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    Genomic context

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    See LOC4341894 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29555383..29560624)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28688754..28693925)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein IRX15-LIKE Neighboring gene T-complex protein 1 subunit eta Neighboring gene probable glucuronosyltransferase Os06g0687900 Neighboring gene uncharacterized LOC4341897

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EH domain-containing protein 1
    Names
    Os06g0687800
    P0623A10.32
    putative receptor-mediated endocytosis 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29555383..29560624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788786.3 → XP_015644272.1  EH domain-containing protein 1

      UniProtKB/TrEMBL
      A0A0P0X0P4, A2YGE4, Q653F5, Q655B1
      Conserved Domains (4) summary
      cd09913
      Location:198 → 442
      EHD; Eps15 homology domain (EHD), C-terminal domain
      cd00052
      Location:19 → 85
      EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
      pfam16880
      Location:162 → 194
      EHD_N; N-terminal EH-domain containing protein
      pfam18150
      Location:434 → 536
      DUF5600; Domain of unknown function (DUF5600)
    Nucleotide Protein
    Heading Accession and Version

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