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    LOC4337268 uncharacterized LOC4337268 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337268, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4337268
    Gene description
    uncharacterized LOC4337268
    Locus tag
    OSNPB_040658600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    24K23.8
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    Genomic context

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    See LOC4337268 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34109773..34111670, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33589847..33591861, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic Neighboring gene ABC transporter F family member 4-like Neighboring gene cold-responsive protein kinase 1 Neighboring gene uncharacterized LOC4337270

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337268
    Names
    Os04g0658600
    ribosomal RNA processing protein 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34109773..34111670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781077.3 → XP_015636563.1  uncharacterized protein LOC4337268

      UniProtKB/TrEMBL
      A0A0N7KJU9, A0A5S6RCY2, A0A979HKR4, B9FCX7, Q0J9E4, Q7XN82, Q8S3P9
      Conserved Domains (1) summary
      pfam05997
      Location:18 → 222
      Nop52; Nucleolar protein,Nop52
    Nucleotide Protein
    Heading Accession and Version

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