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    LOC4327055 diacylglycerol kinase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327055, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327055
    Gene description
    diacylglycerol kinase 5
    Locus tag
    OSNPB_010783200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 155.9), mature seeds (RPKM 71.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33792452..33798771, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33186604..33192973, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277049 Neighboring gene uncharacterized LOC107278667 Neighboring gene pentatricopeptide repeat-containing protein At1g09900 Neighboring gene uncharacterized LOC136352837 Neighboring gene uncharacterized LOC4327056 Neighboring gene universal stress protein PHOS32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent diacylglycerol kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein kinase C-activating G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    diacylglycerol kinase 5
    Names
    B1100D10.35
    Os01g0783200
    putative diacylglycerol kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33792452..33798771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765515.2 → XP_015621001.1  diacylglycerol kinase 5 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V8Z9, B9ETD3, Q0JIR2, Q5ZAU2
      Conserved Domains (2) summary
      smart00046
      Location:39 → 178
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      cl02440
      Location:231 → 404
      DAGK_acc; Diacylglycerol kinase accessory domain

    2. XM_015765514.3 → XP_015621000.1  diacylglycerol kinase 5 isoform X1

      UniProtKB/TrEMBL
      B9ETD3
      Conserved Domains (2) summary
      smart00046
      Location:46 → 185
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      cl02440
      Location:238 → 411
      DAGK_acc; Diacylglycerol kinase accessory domain
    Nucleotide Protein
    Heading Accession and Version

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