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    LOC4327412 V-type proton ATPase subunit a1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327412, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327412
    Gene description
    V-type proton ATPase subunit a1
    Locus tag
    OSNPB_010834200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 42.3), roots before flowering (RPKM 35.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36357697..36368695)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35732665..35743630)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein IQ-DOMAIN 1 Neighboring gene interactor of constitutive active ROPs 2, chloroplastic Neighboring gene uncharacterized LOC9272196 Neighboring gene nuclear transcription factor Y subunit B-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit a1
    Names
    Os01g0834200
    P0460C04.33-1
    P0460C04.33-2
    putative vacuolar-type H(+)-ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36357697..36368695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764521.3 → XP_015620007.1  V-type proton ATPase subunit a1

      UniProtKB/TrEMBL
      A0A0P0VA17, A0A5S6RBW2, A0A9K3Y6W9, B8ABP4, Q0JHZ6, Q5QLD9
      Conserved Domains (1) summary
      pfam01496
      Location:36 → 810
      V_ATPase_I; V-type ATPase 116kDa subunit family
    Nucleotide Protein
    Heading Accession and Version

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