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    LOC4336825 protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336825, updated on 13-Jul-2024

    Summary

    Gene symbol
    LOC4336825
    Gene description
    protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
    Locus tag
    OSNPB_040591100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 90.7), roots after flowering (RPKM 47.1) and 6 other tissues See more
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    Genomic context

    See LOC4336825 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30400992..30403088, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29894798..29896875, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH94 Neighboring gene 28 kDa ribonucleoprotein, chloroplastic Neighboring gene E3 ubiquitin-protein ligase Os04g0590900-like Neighboring gene uncharacterized LOC4336826 Neighboring gene uncharacterized LOC136355984

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
    Names
    Os04g0591100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30400992..30403088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781645.3XP_015637131.1  protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

      UniProtKB/TrEMBL
      A0A0N7KJL5, A0A8J8YG41, B8ATJ2, B9FC83, Q01HI5, Q0JAL2, Q5VSX3, Q7F9Y5
      Conserved Domains (1) summary
      pfam04640
      Location:89160
      PLATZ; PLATZ transcription factor