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    LOC4344298 protein ENHANCED DISEASE RESISTANCE 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344298, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4344298
    Gene description
    protein ENHANCED DISEASE RESISTANCE 4
    Locus tag
    OSNPB_070680600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1205_F02.25
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    Genomic context

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    See LOC4344298 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29082697..29087505, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28848854..28853684, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor WRKY45-2 Neighboring gene uncharacterized LOC4344297 Neighboring gene serine/threonine-protein kinase AtPK2/AtPK19 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene eukaryotic translation initiation factor 2 subunit beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ENHANCED DISEASE RESISTANCE 4
    Names
    OSJNBa0008J01.12
    Os07g0680600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29082697..29087505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027033.2 → XP_025882818.1  protein ENHANCED DISEASE RESISTANCE 4

      UniProtKB/TrEMBL
      A2YPZ6, Q0D3L2, Q7XHX2
      Conserved Domains (3) summary
      pfam05262
      Location:72 → 196
      Borrelia_P83; Borrelia P83/100 protein
      PHA03307
      Location:47 → 344
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam11331
      Location:426 → 468
      zinc_ribbon_12; Probable zinc-ribbon domain

    2. XM_066312053.1 → XP_066168150.1  protein ENHANCED DISEASE RESISTANCE 4

      UniProtKB/TrEMBL
      Q0D3L2, Q7XHX2

    3. XM_015792231.3 → XP_015647717.1  protein ENHANCED DISEASE RESISTANCE 4

      UniProtKB/TrEMBL
      A2YPZ6, Q0D3L2, Q7XHX2
      Conserved Domains (3) summary
      pfam05262
      Location:72 → 196
      Borrelia_P83; Borrelia P83/100 protein
      PHA03307
      Location:47 → 344
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam11331
      Location:426 → 468
      zinc_ribbon_12; Probable zinc-ribbon domain
    Nucleotide Protein
    Heading Accession and Version

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