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    LOC4345340 protein PHR1-LIKE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345340, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345340
    Gene description
    protein PHR1-LIKE 3
    Locus tag
    OSNPB_080346400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345340 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15772382..15780711)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15695540..15703941)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha Neighboring gene glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic/amyloplastic/cytosolic-like Neighboring gene myb family transcription factor PHL7 Neighboring gene uncharacterized LOC107275436

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PHR1-LIKE 3
    Names
    Os08g0346400
    Os08g0346450
    P0404D10.1-1
    P0404D10.1-2
    P0410E11.132-1
    P0410E11.132-2
    transfactor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      15772382..15780711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795475.3 → XP_015650961.1  protein PHR1-LIKE 3

      UniProtKB/TrEMBL
      A0A0P0XFL7, Q6ZDK2, Q84QT1
      Conserved Domains (2) summary
      TIGR01557
      Location:34 → 90
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:129 → 175
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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