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    LOC4330529 clustered mitochondria protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330529, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330529
    Gene description
    clustered mitochondria protein
    Locus tag
    OSNPB_020717400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1191_G08.42; OJ2056_H01.14
    Expression
    Ubiquitous expression in roots before flowering (RPKM 37.4), flower buds (RPKM 37.3) and 6 other tissues See more
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    Genomic context

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    See LOC4330529 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30255298..30266680, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29763616..29775047, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330527 Neighboring gene outer envelope pore protein 16-3, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC4330530 Neighboring gene uncharacterized LOC4330531

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clustered mitochondria protein
    Names
    Os02g0717400
    eukaryotic translation initiation factor 3 subunit (eIF-3)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30255298..30266680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770316.3 → XP_015625802.1  clustered mitochondria protein isoform X2

      UniProtKB/TrEMBL
      A0A0P0VNZ1, B8AHM3, Q6ZGV8
      Conserved Domains (6) summary
      sd00006
      Location:1060 → 1095
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1142 → 1216
      TPR_12; Tetratricopeptide repeat
      pfam05303
      Location:265 → 334
      DUF727; Protein of unknown function (DUF727)
      pfam12807
      Location:808 → 990
      eIF3_p135; Translation initiation factor eIF3 subunit 135
      pfam13236
      Location:386 → 665
      CLU; Clustered mitochondria
      pfam15044
      Location:102 → 177
      CLU_N; Mitochondrial function, CLU-N-term

    2. XM_026022859.2 → XP_025878644.1  clustered mitochondria protein isoform X1

      UniProtKB/TrEMBL
      B8AHM3
      Conserved Domains (5) summary
      sd00006
      Location:1084 → 1119
      TPR; TPR repeat [structural motif]
      pfam12807
      Location:832 → 1014
      eIF3_p135; Translation initiation factor eIF3 subunit 135
      pfam13236
      Location:386 → 689
      CLU; Clustered mitochondria
      pfam13424
      Location:1166 → 1240
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:100 → 177
      CLU_N; Mitochondrial function, CLU-N-term

    3. XM_015770315.2 → XP_015625801.1  clustered mitochondria protein isoform X1

      UniProtKB/TrEMBL
      B8AHM3
      Conserved Domains (5) summary
      sd00006
      Location:1084 → 1119
      TPR; TPR repeat [structural motif]
      pfam12807
      Location:832 → 1014
      eIF3_p135; Translation initiation factor eIF3 subunit 135
      pfam13236
      Location:386 → 689
      CLU; Clustered mitochondria
      pfam13424
      Location:1166 → 1240
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:100 → 177
      CLU_N; Mitochondrial function, CLU-N-term
    Nucleotide Protein
    Heading Accession and Version

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