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    LOC4349500 probable inactive shikimate kinase like 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349500, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349500
    Gene description
    probable inactive shikimate kinase like 2, chloroplastic
    Locus tag
    OSNPB_100577700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 42.7), flower buds (RPKM 22.9) and 5 other tissues See more
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    Genomic context

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    See LOC4349500 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23724341..23727211)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23032194..23035060)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 29 Neighboring gene lysine-specific demethylase JMJ706-like Neighboring gene inactive poly [ADP-ribose] polymerase RCD1 Neighboring gene glycerol-3-phosphate acyltransferase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive shikimate kinase like 2, chloroplastic
    Names
    Os10g0577700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423112.1 → NP_001410041.1  probable inactive shikimate kinase like 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK061718, AK100237
      UniProtKB/TrEMBL
      B8BIE8, Q0IVD5, Q336N7, Q8W3G4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23724341..23727211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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