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    LOC4351697 uncharacterized LOC4351697 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351697, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4351697
    Gene description
    uncharacterized LOC4351697
    Locus tag
    OSNPB_120189900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 5.3), flower buds (RPKM 2.7) and 6 other tissues See more
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    Genomic context

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    See LOC4351697 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4558320..4562458)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4527362..4532879)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable indole-3-pyruvate monooxygenase YUCCA11 Neighboring gene uncharacterized LOC4351696 Neighboring gene GDP-L-galactose phosphorylase 2 Neighboring gene O-fucosyltransferase 38 Neighboring gene psbP domain-containing protein 4, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of LSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Las1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, large subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351697
    Names
    Os12g0189900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      4558320..4562458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764403.2 → XP_015619889.1  uncharacterized protein LOC4351697 isoform X4

      UniProtKB/TrEMBL
      B8BNI5
      Conserved Domains (1) summary
      pfam04031
      Location:2 → 66
      Las1; Las1-like

    2. XM_066306367.1 → XP_066162464.1  uncharacterized protein LOC4351697 isoform X1

      UniProtKB/TrEMBL
      B8BNI5

    3. XM_015764402.2 → XP_015619888.1  uncharacterized protein LOC4351697 isoform X2

      UniProtKB/TrEMBL
      A0A8J8Y8Q8, B8BNI5, B9GC81, Q0IPK9, Q2QWN0
      Conserved Domains (1) summary
      pfam04031
      Location:26 → 173
      Las1; Las1-like

    4. XM_066306368.1 → XP_066162465.1  uncharacterized protein LOC4351697 isoform X3

      UniProtKB/TrEMBL
      B8BNI5
    Nucleotide Protein
    Heading Accession and Version

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