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    LOC4344448 indole-2-monooxygenase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344448, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344448
    Gene description
    indole-2-monooxygenase
    Locus tag
    OSNPB_080105800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1300_E01.18-1; OJ1300_E01.18-2
    Expression
    Broad expression in roots after flowering (RPKM 23.3), mature seeds (RPKM 21.7) and 6 other tissues See more
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    Genomic context

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    See LOC4344448 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (306590..308989, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (301694..304056, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene indole-2-monooxygenase-like Neighboring gene indole-2-monooxygenase-like Neighboring gene indole-2-monooxygenase Neighboring gene indole-2-monooxygenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    indole-2-monooxygenase
    Names
    Os08g0105800
    P0450B04.3-1
    P0450B04.3-2
    putative cytochrome P450 71C4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      306590..308989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792971.3 → XP_015648457.1  indole-2-monooxygenase

      UniProtKB/TrEMBL
      B8BA33, B9FYP1, Q6ZD83
      Conserved Domains (1) summary
      cd11072
      Location:97 → 537
      CYP71-like; cytochrome P450 family 71 and similar cytochrome P450s
    Nucleotide Protein
    Heading Accession and Version

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