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    LOC4329443 gamma carbonic anhydrase-like 1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329443, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329443
    Gene description
    gamma carbonic anhydrase-like 1, mitochondrial
    Locus tag
    OSNPB_020508000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 40.1), flower buds (RPKM 36.1) and 6 other tissues See more
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    Genomic context

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    See LOC4329443 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (18600236..18603872, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (18139105..18142748, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267555 Neighboring gene NDR1/HIN1-like protein 6 Neighboring gene uncharacterized LOC4329444 Neighboring gene proline-rich receptor-like protein kinase PERK2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    gamma carbonic anhydrase-like 1, mitochondrial
    Names
    OSJNBa0052M16.12
    Os02g0508000
    P0047E05.39
    putative mitochondrial NADH:ubiquinone oxidoreductase 29 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      18600236..18603872 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767315.3 → XP_015622801.1  gamma carbonic anhydrase-like 1, mitochondrial

      UniProtKB/TrEMBL
      A0A0N7KFC6, Q6K2G7, Q6K6J1
      Conserved Domains (2) summary
      cd04645
      Location:73 → 231
      LbH_gamma_CA_like; Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      PLN02472
      Location:3 → 258
      PLN02472; uncharacterized protein
    Nucleotide Protein
    Heading Accession and Version

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